Variant report

Variant	rs34495512
Chromosome Location	chr5:91072870-91072871
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs13161413	0.84[EUR][1000 genomes]
rs1692434	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1692436	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1701359	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34444727	0.84[EUR][1000 genomes]
rs35761722	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67419767	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71637346	1.00[ASN][1000 genomes]
rs71637349	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830394	chr5:90944049-91107749	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv830395	chr5:90955521-91135272	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv882370	chr5:90986181-91287437	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv882371	chr5:91018052-91092920	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv882372	chr5:91018052-91221647	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:91065600-91076800	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr5:91072200-91073000	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr5:91072200-91073000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:91072200-91073000	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr5:91072400-91073000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr5:91072400-91073000	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr5:91072400-91073200	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr5:91072400-91073200	Enhancers	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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