Variant report

Variant	rs13161514
Chromosome Location	chr5:54011127-54011128
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11738857	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1445841	0.93[EUR][1000 genomes]
rs16883342	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34249542	0.93[EUR][1000 genomes]
rs4452522	0.93[EUR][1000 genomes]
rs4492076	0.93[EUR][1000 genomes]
rs4591701	0.93[EUR][1000 genomes]
rs6880283	0.93[EUR][1000 genomes]
rs6897182	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71622147	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71622148	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv965525	chr5:54010194-54018240	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:54009400-54011600	Enhancers	Gastric	stomach
2	chr5:54009400-54011800	Enhancers	Fetal Heart	heart
3	chr5:54009400-54012000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr5:54009400-54012200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr5:54010000-54011200	Weak transcription	Right Atrium	heart
6	chr5:54010200-54011200	Weak transcription	Stomach Mucosa	stomach
7	chr5:54010200-54014400	Weak transcription	Adipose Nuclei	Adipose
8	chr5:54010400-54011400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr5:54010400-54011600	Enhancers	Right Ventricle	heart
10	chr5:54010600-54011400	Enhancers	Left Ventricle	heart
11	chr5:54010600-54014200	Weak transcription	Fetal Lung	lung
12	chr5:54010600-54014400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr5:54010600-54014400	Weak transcription	NHLF	lung
14	chr5:54010600-54014400	Weak transcription	Osteobl	bone
15	chr5:54010600-54015600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr5:54010600-54016600	Weak transcription	Aorta	Aorta
17	chr5:54011000-54014600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links