Variant report

Variant	rs16883342
Chromosome Location	chr5:54010478-54010479
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11738857	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13161514	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1445841	0.89[EUR][1000 genomes]
rs34249542	0.89[EUR][1000 genomes]
rs4452522	0.89[EUR][1000 genomes]
rs4492076	0.89[EUR][1000 genomes]
rs4591701	0.89[EUR][1000 genomes]
rs6880283	0.89[EUR][1000 genomes]
rs6897182	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71622147	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71622148	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv965525	chr5:54010194-54018240	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:54009000-54010600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr5:54009400-54010600	Enhancers	Aorta	Aorta
3	chr5:54009400-54010600	Enhancers	Osteobl	bone
4	chr5:54009400-54011600	Enhancers	Gastric	stomach
5	chr5:54009400-54011800	Enhancers	Fetal Heart	heart
6	chr5:54009400-54012000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr5:54009400-54012200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr5:54009800-54010600	Enhancers	Fetal Lung	lung
9	chr5:54009800-54010600	Enhancers	NHLF	lung
10	chr5:54010000-54011200	Weak transcription	Right Atrium	heart
11	chr5:54010200-54010600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr5:54010200-54010600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr5:54010200-54011200	Weak transcription	Stomach Mucosa	stomach
14	chr5:54010200-54014400	Weak transcription	Adipose Nuclei	Adipose
15	chr5:54010400-54011000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr5:54010400-54011400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr5:54010400-54011600	Enhancers	Right Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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