Variant report

Variant	rs13161718
Chromosome Location	chr5:54132664-54132665
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:56895413..56898195-chr5:54132169..54134689,2	MCF-7	breast:
2	chr5:54131587..54134276-chr5:54135808..54138723,2	K562	blood:

Extended variants
information (count: 113 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:111)

rs_ID	r²[population]
rs10036257	0.96[ASN][1000 genomes]
rs10036606	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10039924	0.85[ASN][1000 genomes]
rs10042288	0.96[ASN][1000 genomes]
rs10042394	0.96[ASN][1000 genomes]
rs10042495	0.96[ASN][1000 genomes]
rs10043408	0.86[ASN][1000 genomes]
rs10045175	0.96[ASN][1000 genomes]
rs10045765	0.96[ASN][1000 genomes]
rs10045790	0.85[ASN][1000 genomes]
rs10050561	0.83[ASN][1000 genomes]
rs10053168	0.93[ASN][1000 genomes]
rs10057871	0.96[ASN][1000 genomes]
rs10058571	0.96[ASN][1000 genomes]
rs10058862	0.96[ASN][1000 genomes]
rs10066294	0.94[ASN][1000 genomes]
rs10066622	0.96[ASN][1000 genomes]
rs10068073	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10071183	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10073662	0.85[ASN][1000 genomes]
rs10073721	0.85[ASN][1000 genomes]
rs10434559	0.83[ASN][1000 genomes]
rs10461588	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10471923	0.96[ASN][1000 genomes]
rs1073709	0.96[ASN][1000 genomes]
rs10737956	0.87[ASN][1000 genomes]
rs10805463	0.93[ASN][1000 genomes]
rs10805468	0.85[ASN][1000 genomes]
rs10805469	0.97[ASN][1000 genomes]
rs10940427	0.90[ASN][1000 genomes]
rs10940428	0.96[ASN][1000 genomes]
rs11950757	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11952681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11959080	0.83[ASN][1000 genomes]
rs12514244	0.96[ASN][1000 genomes]
rs12515327	0.97[ASN][1000 genomes]
rs12520494	0.94[ASN][1000 genomes]
rs12522199	0.96[ASN][1000 genomes]
rs13155441	0.96[ASN][1000 genomes]
rs13161386	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13167527	0.96[ASN][1000 genomes]
rs13171964	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13173669	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13180287	0.96[ASN][1000 genomes]
rs13186826	0.96[ASN][1000 genomes]
rs1988528	0.81[EUR][1000 genomes]
rs1991498	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs2017318	0.81[EUR][1000 genomes]
rs2017540	0.81[EUR][1000 genomes]
rs2407758	0.81[EUR][1000 genomes]
rs4074332	0.86[JPT][hapmap]
rs4242044	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4242045	0.96[ASN][1000 genomes]
rs4242046	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4242047	0.97[ASN][1000 genomes]
rs4242048	1.00[ASN][1000 genomes]
rs4282277	0.83[ASN][1000 genomes]
rs4289528	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4290968	0.93[ASN][1000 genomes]
rs4298212	0.83[ASN][1000 genomes]
rs4315891	0.83[EUR][1000 genomes]
rs4320207	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4336310	0.93[ASN][1000 genomes]
rs4336311	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4356994	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4362906	0.96[ASN][1000 genomes]
rs4373237	0.83[EUR][1000 genomes]
rs4407587	0.83[EUR][1000 genomes]
rs4437335	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4451013	0.93[ASN][1000 genomes]
rs4451014	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4457032	0.93[ASN][1000 genomes]
rs4498213	0.83[ASN][1000 genomes]
rs4505913	0.83[ASN][1000 genomes]
rs4519880	0.96[ASN][1000 genomes]
rs4527555	0.96[ASN][1000 genomes]
rs4527556	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4582235	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4591702	0.96[ASN][1000 genomes]
rs4610422	0.96[ASN][1000 genomes]
rs4645296	0.89[ASN][1000 genomes]
rs4865586	0.86[JPT][hapmap];0.83[EUR][1000 genomes]
rs4865870	0.83[ASN][1000 genomes]
rs4865872	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4865873	0.93[ASN][1000 genomes]
rs4865874	0.93[ASN][1000 genomes]
rs4865875	0.96[ASN][1000 genomes]
rs4865876	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4865877	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4865883	0.81[EUR][1000 genomes]
rs6450251	0.96[ASN][1000 genomes]
rs6450252	0.96[ASN][1000 genomes]
rs6450253	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6860729	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6860824	0.86[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6863705	0.88[CHB][hapmap];0.92[JPT][hapmap]
rs6867867	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6887578	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6892315	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6893903	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6899052	0.93[ASN][1000 genomes]
rs7446423	0.96[ASN][1000 genomes]
rs7446869	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7708368	0.83[EUR][1000 genomes]
rs7728303	0.96[ASN][1000 genomes]
rs7731103	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9292073	0.85[ASN][1000 genomes]
rs9292074	0.96[ASN][1000 genomes]
rs9687636	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs981978	0.81[EUR][1000 genomes]
rs9968754	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830300	chr5:54056300-54257344	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3358092	chr5:54077828-54189150	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:54117200-54138000	Weak transcription	Aorta	Aorta
2	chr5:54126800-54133400	Enhancers	NHLF	lung
3	chr5:54127400-54135800	Enhancers	Fetal Intestine Small	intestine
4	chr5:54128600-54135000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr5:54128800-54133200	Enhancers	HUVEC	blood vessel
6	chr5:54129600-54134000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:54129600-54134000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr5:54130000-54135800	Enhancers	Fetal Intestine Large	intestine
9	chr5:54130600-54132800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr5:54130600-54134000	Weak transcription	Pancreas	Pancrea
11	chr5:54130800-54132800	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr5:54130800-54135000	Weak transcription	Right Atrium	heart
13	chr5:54131000-54133400	Enhancers	Osteobl	bone
14	chr5:54131000-54140800	Weak transcription	Adipose Nuclei	Adipose
15	chr5:54132000-54132800	Weak transcription	Liver	Liver
16	chr5:54132000-54133400	Enhancers	Fetal Stomach	stomach
17	chr5:54132000-54137000	Weak transcription	Placenta	Placenta
18	chr5:54132000-54140800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr5:54132200-54132800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr5:54132200-54133000	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr5:54132400-54134000	Weak transcription	Stomach Mucosa	stomach
22	chr5:54132400-54134600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr5:54132400-54136800	Weak transcription	Gastric	stomach
24	chr5:54132600-54133400	Enhancers	Primary neutrophils fromperipheralblood	blood

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