Variant report

Variant	rs10043408
Chromosome Location	chr5:54110207-54110208
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10036257	0.90[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10036606	0.90[ASN][1000 genomes]
rs10042288	0.90[ASN][1000 genomes]
rs10042394	0.92[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10042495	0.90[ASN][1000 genomes]
rs10044938	0.98[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs10045175	0.91[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10045765	0.91[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10053168	0.85[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs10057871	0.90[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10058571	0.90[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10058862	0.90[ASN][1000 genomes]
rs10058905	0.83[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs10066294	0.92[ASN][1000 genomes]
rs10066622	0.90[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10066683	0.84[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs10073662	0.84[AFR][1000 genomes]
rs10461588	0.88[ASN][1000 genomes]
rs10471923	0.90[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs1073709	0.94[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10737956	0.93[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs10805463	0.89[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs10805468	0.93[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs10805469	0.89[ASN][1000 genomes]
rs10940427	0.85[ASN][1000 genomes]
rs10940428	0.90[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs11952681	0.86[ASN][1000 genomes]
rs12514244	0.92[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs12515327	0.89[ASN][1000 genomes]
rs12520494	0.92[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs12522199	0.92[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs13155441	0.90[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs13161386	0.86[ASN][1000 genomes]
rs13161718	0.86[ASN][1000 genomes]
rs13167527	0.90[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs13171964	0.86[ASN][1000 genomes]
rs13173669	0.90[ASN][1000 genomes]
rs13180287	0.90[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs13186455	0.81[AFR][1000 genomes]
rs13186826	0.90[ASN][1000 genomes]
rs35922886	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4242045	0.90[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs4242046	0.89[ASN][1000 genomes]
rs4242047	0.89[ASN][1000 genomes]
rs4242048	0.86[ASN][1000 genomes]
rs4289528	0.89[ASN][1000 genomes]
rs4290968	0.88[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs4320207	0.86[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs4336310	0.88[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs4336311	0.86[ASN][1000 genomes]
rs4362906	0.90[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs4437335	0.86[ASN][1000 genomes]
rs4451013	0.94[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs4451014	0.86[ASN][1000 genomes]
rs4457032	0.88[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs4464652	0.82[AFR][1000 genomes]
rs4505913	0.89[ASN][1000 genomes]
rs4519880	0.90[ASN][1000 genomes]
rs4527555	0.90[ASN][1000 genomes]
rs4527556	0.90[ASN][1000 genomes]
rs4582235	0.86[ASN][1000 genomes]
rs4591702	0.90[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs4610422	0.90[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs4645296	0.90[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4865873	0.89[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs4865874	0.89[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs4865875	0.94[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs4865876	0.91[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs4865877	0.86[ASN][1000 genomes]
rs62355005	0.85[AFR][1000 genomes]
rs6450251	0.86[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs6450252	0.89[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs6450253	0.90[ASN][1000 genomes]
rs6887578	0.86[ASN][1000 genomes]
rs6899052	0.88[ASN][1000 genomes]
rs7446423	0.94[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs7446869	0.86[ASN][1000 genomes]
rs7728303	0.89[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs7728418	0.86[ASN][1000 genomes]
rs7731103	0.88[ASN][1000 genomes]
rs9292074	0.94[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs9687636	0.90[ASN][1000 genomes]
rs9968754	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830300	chr5:54056300-54257344	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3358092	chr5:54077828-54189150	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:54109400-54117800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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