Variant report

Variant	rs13186455
Chromosome Location	chr5:54102571-54102572
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:54102068..54104903-chr5:54105238..54107823,3	K562	blood:
2	chr5:54098223..54100100-chr5:54101975..54104817,2	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10036257	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10042394	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs10043408	0.81[AFR][1000 genomes]
rs10044938	0.82[AFR][1000 genomes]
rs10045175	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs10045765	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs10053168	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10057871	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs10058571	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10066622	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10073662	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10073721	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10471923	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1073709	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs10737956	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs10805463	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10805468	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs10940428	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12514244	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs12520494	0.84[AFR][1000 genomes]
rs12522199	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs13155441	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13167527	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13180287	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35922886	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs4242045	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4290968	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4336310	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4362906	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs4451013	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs4457032	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4519880	0.82[EUR][1000 genomes]
rs4591702	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs4610422	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs4645296	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs4865873	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4865874	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4865875	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs4865876	0.83[AFR][1000 genomes]
rs6450251	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6450252	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7446423	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs7728303	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9292073	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9292074	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880717	chr5:54025701-54106378	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830300	chr5:54056300-54257344	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv3358092	chr5:54077828-54189150	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2754136	chr5:54083387-54107727	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:54087600-54103600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:54091000-54103600	Weak transcription	Aorta	Aorta
3	chr5:54100000-54103400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr5:54100200-54103200	Weak transcription	HUVEC	blood vessel
5	chr5:54100600-54103200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr5:54100600-54103200	Weak transcription	Osteobl	bone
7	chr5:54100600-54103400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr5:54100600-54103400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr5:54100600-54103600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr5:54100800-54103200	Weak transcription	NHDF-Ad	bronchial
11	chr5:54101000-54103400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr5:54101200-54103200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr5:54101600-54103200	Weak transcription	NHLF	lung
14	chr5:54102200-54103600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr5:54102200-54103800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr5:54102200-54103800	Weak transcription	Lung	lung

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