Variant report

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10036257	0.83[AFR][1000 genomes]
rs10042394	0.80[AFR][1000 genomes]
rs10043408	0.85[AFR][1000 genomes]
rs10044938	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs10057871	0.83[AFR][1000 genomes]
rs10058123	0.80[AMR][1000 genomes]
rs10058571	0.83[AFR][1000 genomes]
rs10058905	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10066622	0.83[AFR][1000 genomes]
rs10066683	0.87[AMR][1000 genomes]
rs10471923	0.83[AFR][1000 genomes]
rs1073709	0.82[AFR][1000 genomes]
rs10737956	0.81[AFR][1000 genomes]
rs10805463	0.82[AFR][1000 genomes]
rs10805468	0.81[AFR][1000 genomes]
rs10940428	0.83[AFR][1000 genomes]
rs12514244	0.80[AFR][1000 genomes]
rs12520494	0.80[AFR][1000 genomes]
rs12522199	0.80[AFR][1000 genomes]
rs13155441	0.83[AFR][1000 genomes]
rs13167527	0.84[AFR][1000 genomes]
rs13180287	0.83[AFR][1000 genomes]
rs35922886	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4242045	0.83[AFR][1000 genomes]
rs4290968	0.81[AFR][1000 genomes]
rs4336310	0.81[AFR][1000 genomes]
rs4362906	0.83[AFR][1000 genomes]
rs4451013	0.82[AFR][1000 genomes]
rs4457032	0.81[AFR][1000 genomes]
rs4591702	0.83[AFR][1000 genomes]
rs4610422	0.83[AFR][1000 genomes]
rs4645296	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4865873	0.82[AFR][1000 genomes]
rs4865874	0.82[AFR][1000 genomes]
rs4865875	0.82[AFR][1000 genomes]
rs6450252	0.82[AFR][1000 genomes]
rs7446423	0.82[AFR][1000 genomes]
rs7720758	0.81[ASN][1000 genomes]
rs7728303	0.82[AFR][1000 genomes]
rs9292074	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830300	chr5:54056300-54257344	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3358092	chr5:54077828-54189150	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:54108600-54109400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:54108800-54109400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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