Variant report

Variant	rs10058905
Chromosome Location	chr5:54105066-54105067
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10036257	0.85[AFR][1000 genomes]
rs10042394	0.82[AFR][1000 genomes]
rs10043408	0.83[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs10044938	0.84[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs10045175	0.81[AFR][1000 genomes]
rs10045765	0.81[AFR][1000 genomes]
rs10053168	0.81[AFR][1000 genomes]
rs10057871	0.85[AFR][1000 genomes]
rs10058571	0.85[AFR][1000 genomes]
rs10066294	0.81[ASN][1000 genomes]
rs10066622	0.85[AFR][1000 genomes]
rs10066683	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10073662	0.80[AFR][1000 genomes]
rs10471923	0.85[AFR][1000 genomes]
rs1073709	0.83[AFR][1000 genomes]
rs10737956	0.82[AFR][1000 genomes]
rs10805463	0.83[AFR][1000 genomes]
rs10805468	0.82[AFR][1000 genomes]
rs10940428	0.85[AFR][1000 genomes]
rs12514244	0.82[AFR][1000 genomes]
rs12520494	0.82[AFR][1000 genomes]
rs12522199	0.82[AFR][1000 genomes]
rs13155441	0.85[AFR][1000 genomes]
rs13167527	0.84[AFR][1000 genomes]
rs13180287	0.85[AFR][1000 genomes]
rs35922886	0.82[AFR][1000 genomes]
rs4242045	0.85[AFR][1000 genomes]
rs4290968	0.84[AFR][1000 genomes]
rs4336310	0.84[AFR][1000 genomes]
rs4362906	0.85[AFR][1000 genomes]
rs4451013	0.83[AFR][1000 genomes]
rs4457032	0.84[AFR][1000 genomes]
rs4591702	0.85[AFR][1000 genomes]
rs4610422	0.85[AFR][1000 genomes]
rs4645296	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4865873	0.83[AFR][1000 genomes]
rs4865874	0.83[AFR][1000 genomes]
rs4865875	0.83[AFR][1000 genomes]
rs4865876	0.81[AFR][1000 genomes]
rs62355005	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6450251	0.83[AFR][1000 genomes]
rs6450252	0.83[AFR][1000 genomes]
rs7446423	0.83[AFR][1000 genomes]
rs7728303	0.83[AFR][1000 genomes]
rs7728418	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7731103	0.82[ASN][1000 genomes]
rs9292074	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880717	chr5:54025701-54106378	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830300	chr5:54056300-54257344	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv3358092	chr5:54077828-54189150	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2754136	chr5:54083387-54107727	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:54103800-54108200	Weak transcription	Fetal Heart	heart
2	chr5:54104400-54108600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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