Variant report

Variant	rs7728418
Chromosome Location	chr5:54101579-54101580
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10036257	0.82[ASN][1000 genomes]
rs10036606	0.82[ASN][1000 genomes]
rs10042288	0.82[ASN][1000 genomes]
rs10042394	0.82[ASN][1000 genomes]
rs10042495	0.82[ASN][1000 genomes]
rs10043408	0.86[ASN][1000 genomes]
rs10044938	0.85[ASN][1000 genomes]
rs10045175	0.82[ASN][1000 genomes]
rs10045765	0.82[ASN][1000 genomes]
rs10057871	0.82[ASN][1000 genomes]
rs10058571	0.82[ASN][1000 genomes]
rs10058862	0.82[ASN][1000 genomes]
rs10058905	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10066294	0.83[ASN][1000 genomes]
rs10066622	0.82[ASN][1000 genomes]
rs10066683	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10471923	0.82[ASN][1000 genomes]
rs1073709	0.82[ASN][1000 genomes]
rs10805469	0.81[ASN][1000 genomes]
rs10940428	0.82[ASN][1000 genomes]
rs12514244	0.82[ASN][1000 genomes]
rs12515327	0.81[ASN][1000 genomes]
rs12520494	0.81[ASN][1000 genomes]
rs12522199	0.82[ASN][1000 genomes]
rs13155441	0.82[ASN][1000 genomes]
rs13167527	0.82[ASN][1000 genomes]
rs13173669	0.82[ASN][1000 genomes]
rs13180287	0.82[ASN][1000 genomes]
rs13186826	0.82[ASN][1000 genomes]
rs4242045	0.82[ASN][1000 genomes]
rs4242046	0.81[ASN][1000 genomes]
rs4242047	0.81[ASN][1000 genomes]
rs4289528	0.81[ASN][1000 genomes]
rs4320207	0.81[ASN][1000 genomes]
rs4362906	0.82[ASN][1000 genomes]
rs4505913	0.86[ASN][1000 genomes]
rs4519880	0.82[ASN][1000 genomes]
rs4527555	0.82[ASN][1000 genomes]
rs4527556	0.82[ASN][1000 genomes]
rs4591702	0.82[ASN][1000 genomes]
rs4610422	0.82[ASN][1000 genomes]
rs4645296	0.83[ASN][1000 genomes]
rs4865875	0.82[ASN][1000 genomes]
rs4865876	0.82[ASN][1000 genomes]
rs6450251	0.82[ASN][1000 genomes]
rs6450252	0.82[ASN][1000 genomes]
rs6450253	0.82[ASN][1000 genomes]
rs7446423	0.82[ASN][1000 genomes]
rs7720758	0.82[ASN][1000 genomes]
rs7728303	0.82[ASN][1000 genomes]
rs7731103	0.82[ASN][1000 genomes]
rs9292074	0.82[ASN][1000 genomes]
rs9687636	0.82[ASN][1000 genomes]
rs9968754	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880717	chr5:54025701-54106378	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830300	chr5:54056300-54257344	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv3358092	chr5:54077828-54189150	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2754136	chr5:54083387-54107727	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:54087600-54103600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:54091000-54103600	Weak transcription	Aorta	Aorta
3	chr5:54100000-54103400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr5:54100200-54103200	Weak transcription	HUVEC	blood vessel
5	chr5:54100600-54101800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr5:54100600-54103200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr5:54100600-54103200	Weak transcription	Osteobl	bone
8	chr5:54100600-54103400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr5:54100600-54103400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr5:54100600-54103600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr5:54100800-54103200	Weak transcription	NHDF-Ad	bronchial
12	chr5:54101000-54103400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr5:54101200-54103200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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