Variant report

Variant	rs13165155
Chromosome Location	chr5:147300041-147300042
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF274	chr5:147299666-147300204	K562	blood:	n/a	n/a

Variant related genes	Relation type
EEF1GP2	TF binding region

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs13160499	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17717956	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17717968	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17774569	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17774587	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17774641	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1864995	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1864996	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1960751	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1960752	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34157651	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34403399	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34526961	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34733654	0.83[EUR][1000 genomes]
rs35144128	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35381042	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35685037	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35705709	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60855170	0.81[AFR][1000 genomes]
rs61338246	0.81[AFR][1000 genomes]
rs71580461	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73265250	0.81[AFR][1000 genomes]
rs73265257	0.81[AFR][1000 genomes]
rs73265274	0.81[AFR][1000 genomes]
rs73267103	0.83[EUR][1000 genomes]
rs7724336	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021356	chr5:147103627-147310531	Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1033907	chr5:147109014-147309076	Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv537916	chr5:147109014-147309076	Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv3334831	chr5:147165950-147339765	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv1028477	chr5:147255013-147416217	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv525042	chr5:147298497-147302214	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
7	nsv528013	chr5:147298497-147302941	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147292400-147300400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr5:147298000-147300200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr5:147298200-147300200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr5:147298400-147300400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr5:147298800-147300600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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