Variant report

Variant	rs1316549
Chromosome Location	chr13:97966268-97966269
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:97957575..97959438-chr13:97964088..97966414,2	MCF-7	breast:
2	chr13:97965578..97967937-chr13:97972891..97974672,2	MCF-7	breast:
3	chr13:97905642..97908480-chr13:97965969..97968245,2	K562	blood:
4	chr13:97964833..97966698-chr13:97969721..97972103,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1463790	0.91[JPT][hapmap]
rs1973419	0.89[JPT][hapmap];0.81[EUR][1000 genomes]
rs1974086	0.81[CHD][hapmap]
rs4771270	0.84[GIH][hapmap];0.91[JPT][hapmap];0.84[TSI][hapmap]
rs61974439	0.90[ASN][1000 genomes]
rs7320865	0.84[GIH][hapmap];0.86[TSI][hapmap];0.81[EUR][1000 genomes]
rs7338689	0.91[JPT][hapmap]
rs949741	0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516902	0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516904	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9556702	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1316549	GPR18	cis	cerebellum	SCAN

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97925800-97987200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr13:97933200-97970400	Weak transcription	Placenta	Placenta
3	chr13:97942800-97995200	Weak transcription	Thymus	Thymus
4	chr13:97948600-97971600	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr13:97950000-97971200	Weak transcription	Stomach Mucosa	stomach
6	chr13:97954400-97986200	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr13:97955000-97987000	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr13:97955200-97968200	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr13:97955200-97970400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr13:97955200-97986800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr13:97955400-97971400	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr13:97959000-97967800	Weak transcription	Esophagus	oesophagus
13	chr13:97959000-97970400	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr13:97959000-97971200	Weak transcription	Duodenum Mucosa	Duodenum
15	chr13:97959200-97968000	Weak transcription	Fetal Intestine Small	intestine
16	chr13:97959200-97970400	Weak transcription	Small Intestine	intestine
17	chr13:97959400-97988800	Weak transcription	Fetal Intestine Large	intestine
18	chr13:97960800-97967800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr13:97961000-97973800	Weak transcription	NHEK	skin
20	chr13:97961200-97967600	Weak transcription	Aorta	Aorta
21	chr13:97961400-97967600	Weak transcription	Right Ventricle	heart
22	chr13:97961400-97968000	Weak transcription	Fetal Muscle Trunk	muscle
23	chr13:97961400-97975200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr13:97961400-97987200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr13:97961600-97967600	Weak transcription	Adipose Nuclei	Adipose
26	chr13:97961600-97971000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr13:97961600-97971200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr13:97961600-97975400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr13:97961800-97970400	Weak transcription	Fetal Kidney	kidney
30	chr13:97961800-97970400	Weak transcription	HSMM	muscle
31	chr13:97961800-97971000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr13:97961800-97975200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr13:97961800-97977600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr13:97961800-97978000	Weak transcription	HMEC	breast
35	chr13:97962000-97967800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr13:97962000-97971000	Weak transcription	Gastric	stomach
37	chr13:97962000-97979200	Weak transcription	HUVEC	blood vessel
38	chr13:97962000-97991200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr13:97962400-97967600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr13:97962400-97971000	Weak transcription	NH-A	brain
41	chr13:97962400-97978200	Weak transcription	K562	blood
42	chr13:97962600-97966800	Weak transcription	Primary B cells from cord blood	blood
43	chr13:97962600-97971200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr13:97963000-97972600	Enhancers	Brain Substantia Nigra	brain
45	chr13:97963000-97984400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr13:97963400-97966800	Enhancers	Brain Inferior Temporal Lobe	brain
47	chr13:97963600-97977000	Weak transcription	Hela-S3	cervix
48	chr13:97964000-97966600	Enhancers	Brain Cingulate Gyrus	brain
49	chr13:97964200-97970400	Weak transcription	A549	lung
50	chr13:97965000-97972600	Enhancers	Brain Hippocampus Middle	brain

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