Variant report

Variant	rs9516904
Chromosome Location	chr13:97963979-97963980
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:97963342..97965987-chr13:97989189..97990834,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1316549	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1463790	0.91[JPT][hapmap]
rs1973419	0.89[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1974086	0.81[CHD][hapmap]
rs4771270	0.84[GIH][hapmap];0.91[JPT][hapmap];0.84[TSI][hapmap]
rs61974439	0.90[ASN][1000 genomes]
rs7320865	0.82[CEU][hapmap];0.84[GIH][hapmap];0.86[TSI][hapmap];0.81[EUR][1000 genomes]
rs7338689	0.91[JPT][hapmap]
rs949741	0.92[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516902	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9556702	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9516904	GPR18	cis	cerebellum	SCAN

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97925800-97987200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr13:97933200-97970400	Weak transcription	Placenta	Placenta
3	chr13:97942800-97995200	Weak transcription	Thymus	Thymus
4	chr13:97948600-97971600	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr13:97950000-97971200	Weak transcription	Stomach Mucosa	stomach
6	chr13:97950200-97965200	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr13:97950800-97965200	Weak transcription	Primary hematopoietic stem cells	blood
8	chr13:97954400-97986200	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr13:97955000-97964000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr13:97955000-97987000	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr13:97955200-97965600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr13:97955200-97968200	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr13:97955200-97970400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr13:97955200-97986800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr13:97955400-97971400	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr13:97955800-97965800	Weak transcription	Lung	lung
17	chr13:97959000-97967800	Weak transcription	Esophagus	oesophagus
18	chr13:97959000-97970400	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr13:97959000-97971200	Weak transcription	Duodenum Mucosa	Duodenum
20	chr13:97959200-97968000	Weak transcription	Fetal Intestine Small	intestine
21	chr13:97959200-97970400	Weak transcription	Small Intestine	intestine
22	chr13:97959400-97988800	Weak transcription	Fetal Intestine Large	intestine
23	chr13:97959800-97964200	Enhancers	Left Ventricle	heart
24	chr13:97960800-97967800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr13:97961000-97973800	Weak transcription	NHEK	skin
26	chr13:97961200-97965600	Weak transcription	Stomach Smooth Muscle	stomach
27	chr13:97961200-97967600	Weak transcription	Aorta	Aorta
28	chr13:97961400-97965800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr13:97961400-97965800	Weak transcription	Fetal Stomach	stomach
30	chr13:97961400-97967600	Weak transcription	Right Ventricle	heart
31	chr13:97961400-97968000	Weak transcription	Fetal Muscle Trunk	muscle
32	chr13:97961400-97975200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr13:97961400-97987200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr13:97961600-97965200	Weak transcription	Colon Smooth Muscle	Colon
35	chr13:97961600-97967600	Weak transcription	Adipose Nuclei	Adipose
36	chr13:97961600-97971000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr13:97961600-97971200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr13:97961600-97975400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr13:97961800-97964000	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr13:97961800-97965200	Weak transcription	Psoas Muscle	Psoas
41	chr13:97961800-97965400	Weak transcription	Rectal Smooth Muscle	rectum
42	chr13:97961800-97965800	Weak transcription	Primary T cells from cord blood	blood
43	chr13:97961800-97970400	Weak transcription	Fetal Kidney	kidney
44	chr13:97961800-97970400	Weak transcription	HSMM	muscle
45	chr13:97961800-97971000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr13:97961800-97975200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr13:97961800-97977600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr13:97961800-97978000	Weak transcription	HMEC	breast
49	chr13:97962000-97965200	Weak transcription	Fetal Muscle Leg	muscle
50	chr13:97962000-97965200	Weak transcription	Right Atrium	heart

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