Variant report
| Variant | rs13170464 |
|---|---|
| Chromosome Location | chr5:107030711-107030712 |
| allele | A/G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs10039705 | 0.82[ASN][1000 genomes] |
| rs10044317 | 0.82[ASN][1000 genomes] |
| rs12653196 | 0.88[ASN][1000 genomes] |
| rs12654281 | 0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs12657273 | 0.89[ASN][1000 genomes] |
| rs12659812 | 0.84[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs13170272 | 0.80[EUR][1000 genomes] |
| rs13175692 | 0.85[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs13185104 | 0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs13361436 | 0.81[ASN][1000 genomes] |
| rs1388131 | 0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1388132 | 0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1490837 | 0.83[ASN][1000 genomes] |
| rs1490838 | 0.83[ASN][1000 genomes] |
| rs1490840 | 0.85[ASN][1000 genomes] |
| rs17160354 | 0.85[ASN][1000 genomes] |
| rs17160373 | 0.90[ASN][1000 genomes] |
| rs17160389 | 0.83[ASN][1000 genomes] |
| rs35818877 | 0.86[ASN][1000 genomes] |
| rs36016556 | 0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs3987979 | 0.88[ASN][1000 genomes] |
| rs4957705 | 0.81[EUR][1000 genomes] |
| rs55885500 | 0.83[ASN][1000 genomes] |
| rs66947683 | 0.80[EUR][1000 genomes] |
| rs6877006 | 0.86[ASN][1000 genomes] |
| rs73777709 | 0.83[ASN][1000 genomes] |
| rs7724655 | 0.93[ASN][1000 genomes] |
| rs7735300 | 0.88[ASN][1000 genomes] |
| rs967270 | 0.81[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv34018 | chr5:106720912-107110506 | Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:107024400-107032200 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
| 2 | chr5:107029200-107032000 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
