Variant report

Variant	rs17160389
Chromosome Location	chr5:107032877-107032878
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:107016859..107019087-chr5:107031828..107034099,2	MCF-7	breast:
2	chr5:107023431..107026443-chr5:107031056..107034359,3	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10039705	0.87[ASN][1000 genomes]
rs10044317	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12188264	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12653196	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12654281	0.86[ASN][1000 genomes]
rs12657273	0.81[ASN][1000 genomes]
rs12659812	0.81[ASN][1000 genomes]
rs13170464	0.83[ASN][1000 genomes]
rs13175692	0.81[ASN][1000 genomes]
rs13185104	0.86[ASN][1000 genomes]
rs13361436	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1388131	0.86[ASN][1000 genomes]
rs1388132	0.85[ASN][1000 genomes]
rs1490837	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1490838	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1490840	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17160354	0.89[ASN][1000 genomes]
rs17160373	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36016556	0.86[ASN][1000 genomes]
rs3987979	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55885500	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6877006	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73777709	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7724655	0.85[ASN][1000 genomes]
rs7735300	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107031600-107033000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:107032200-107033000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr5:107032400-107033000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:107032400-107033000	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr5:107032400-107049000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr5:107032800-107035000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr5:107032800-107037800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:107032800-107040600	Weak transcription	H1 Cell Line	embryonic stem cell

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