Variant report

Variant	rs13171933
Chromosome Location	chr5:57768326-57768327
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs13181056	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13181234	0.95[ASN][1000 genomes]
rs16888143	0.90[ASN][1000 genomes]
rs2291634	0.90[ASN][1000 genomes]
rs34665646	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35724255	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35875906	0.81[ASN][1000 genomes]
rs3763110	0.98[ASN][1000 genomes]
rs4146755	0.90[ASN][1000 genomes]
rs71626105	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73092596	0.90[ASN][1000 genomes]
rs73094318	0.90[ASN][1000 genomes]
rs73094327	0.98[ASN][1000 genomes]
rs73094329	0.98[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs13171933	AMPD3	trans	lymphoblastoid	RTeQTL
rs13171933	RNF141	trans	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57763000-57771000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:57766800-57769600	Weak transcription	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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