Variant report

Variant	rs73092596
Chromosome Location	chr5:57742482-57742483
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs13171933	0.90[ASN][1000 genomes]
rs13181056	0.85[ASN][1000 genomes]
rs13181234	0.86[ASN][1000 genomes]
rs16888143	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2216723	0.82[ASN][1000 genomes]
rs2291634	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35724255	0.90[ASN][1000 genomes]
rs3763110	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4146755	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57661905	0.87[ASN][1000 genomes]
rs71626105	0.90[ASN][1000 genomes]
rs72758129	0.82[ASN][1000 genomes]
rs73094318	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73094327	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73094329	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73757781	0.82[ASN][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57735200-57751400	Weak transcription	Psoas Muscle	Psoas
2	chr5:57737000-57747400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr5:57737400-57747000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr5:57737800-57748600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr5:57737800-57749000	Weak transcription	Fetal Lung	lung
6	chr5:57740400-57743000	Weak transcription	HSMM	muscle
7	chr5:57741200-57744800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr5:57741200-57745200	Weak transcription	NHEK	skin
9	chr5:57741200-57747000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr5:57741400-57746000	Weak transcription	Fetal Muscle Trunk	muscle
11	chr5:57741400-57750200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr5:57741600-57745800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr5:57741600-57747200	Weak transcription	Esophagus	oesophagus
14	chr5:57742000-57743000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
15	chr5:57742200-57742800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr5:57742200-57743000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr5:57742200-57743000	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr5:57742200-57743200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr5:57742200-57743200	Strong transcription	HMEC	breast
20	chr5:57742200-57743400	Strong transcription	A549	lung
21	chr5:57742200-57747800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr5:57742400-57742600	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr5:57742400-57742600	ZNF genes & repeats	Fetal Brain Female	brain
24	chr5:57742400-57742600	ZNF genes & repeats	NH-A	brain
25	chr5:57742400-57743000	Enhancers	NHDF-Ad	bronchial
26	chr5:57742400-57745000	Weak transcription	Fetal Muscle Leg	muscle

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