Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:57659417..57661558-chr5:57689608..57691662,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10513143	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16888078	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16888143	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2216723	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2291634	0.82[ASN][1000 genomes]
rs4146755	0.82[ASN][1000 genomes]
rs57458739	0.92[AFR][1000 genomes]
rs57661905	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6864935	0.88[AFR][1000 genomes]
rs6884422	0.85[AFR][1000 genomes]
rs72758129	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73092596	0.82[ASN][1000 genomes]
rs73094318	0.82[ASN][1000 genomes]
rs73757770	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73757772	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73757779	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73757798	0.90[AFR][1000 genomes]
rs7700560	0.82[AFR][1000 genomes]
rs7708963	0.85[AFR][1000 genomes]
rs7720098	0.91[AFR][1000 genomes]
rs7732365	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4842	chr5:57653257-57694850	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv508358	chr5:57673230-57709684	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1032746	chr5:57675471-57701548	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv989305	chr5:57678008-57695255	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57689600-57690400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr5:57689600-57690600	Enhancers	NHEK	skin
3	chr5:57690000-57690400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:57690000-57690600	Weak transcription	Aorta	Aorta
5	chr5:57690200-57690400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

Quick Search: