Variant report
| Variant | rs73757779 |
|---|---|
| Chromosome Location | chr5:57686479-57686480 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:57679458..57681464-chr5:57685190..57686778,2 | MCF-7 | breast: | |
| 2 | chr5:57679618..57681387-chr5:57685117..57687190,2 | MCF-7 | breast: | |
| 3 | chr5:57684855..57687554-chr5:57691257..57692769,2 | MCF-7 | breast: | |
| 4 | chr5:57685717..57687980-chr5:57753512..57756250,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000145632 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs10513143 | 0.92[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs16888078 | 0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs16888143 | 1.00[EUR][1000 genomes] |
| rs2216723 | 1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs57458739 | 0.81[AFR][1000 genomes] |
| rs57661905 | 1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs72758129 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs73757770 | 0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs73757772 | 0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs73757781 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7720098 | 0.82[AFR][1000 genomes] |
| rs7732365 | 0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv4842 | chr5:57653257-57694850 | ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv508358 | chr5:57673230-57709684 | Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv1032746 | chr5:57675471-57701548 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | esv989305 | chr5:57678008-57695255 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 5 | esv3513389 | chr5:57678195-57686993 | Weak transcription Enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 6 | esv1004243 | chr5:57679002-57687169 | Weak transcription Enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 7 | esv2518600 | chr5:57679100-57687258 | Weak transcription Enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 8 | esv3500690 | chr5:57679206-57686997 | Enhancers Weak transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 9 | esv2473328 | chr5:57679342-57686665 | Weak transcription Enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 10 | nsv435821 | chr5:57679926-57687219 | Weak transcription Enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 11 | nsv436454 | chr5:57680016-57686531 | Weak transcription Enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:57677200-57689600 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
