Variant report

Variant	rs57661905
Chromosome Location	chr5:57713340-57713341
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10513143	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16888078	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16888143	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2216723	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2291634	0.87[ASN][1000 genomes]
rs3763110	0.81[ASN][1000 genomes]
rs4146755	0.87[ASN][1000 genomes]
rs72758129	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73092596	0.87[ASN][1000 genomes]
rs73094318	0.87[ASN][1000 genomes]
rs73094327	0.81[ASN][1000 genomes]
rs73094329	0.81[ASN][1000 genomes]
rs73757770	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73757772	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73757779	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73757781	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7732365	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028460	chr5:57691003-57719435	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57712200-57713400	Weak transcription	Brain Germinal Matrix	brain
2	chr5:57712200-57713400	Weak transcription	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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