Variant report

Variant	rs2216723
Chromosome Location	chr5:57700385-57700386
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10513143	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs154672	1.00[YRI][hapmap]
rs16888078	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16888143	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2194196	1.00[YRI][hapmap]
rs2291634	0.82[ASN][1000 genomes]
rs4146755	0.82[ASN][1000 genomes]
rs57661905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72758129	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73092596	0.82[ASN][1000 genomes]
rs73094318	0.82[ASN][1000 genomes]
rs73757770	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73757772	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73757779	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73757781	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7732365	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508358	chr5:57673230-57709684	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1032746	chr5:57675471-57701548	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1028460	chr5:57691003-57719435	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57695600-57701400	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr5:57699000-57705000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr5:57699600-57704600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr5:57699600-57708200	Enhancers	HMEC	breast
5	chr5:57699800-57704800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:57700000-57708000	Enhancers	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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