Variant report

Variant	rs13173682
Chromosome Location	chr5:92487543-92487544
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs4358503	0.81[ASN][1000 genomes]
rs6557063	0.84[ASN][1000 genomes]
rs66496757	0.84[ASN][1000 genomes]
rs67779882	0.84[ASN][1000 genomes]
rs6873704	0.84[ASN][1000 genomes]
rs6883741	0.84[ASN][1000 genomes]
rs7446568	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015770	chr5:91911877-92498264	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1029175	chr5:92436038-92548473	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Obesity-related traits	23251661	GWAS catalog

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92481200-92489200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:92485800-92487600	Enhancers	HSMMtube	muscle
3	chr5:92486000-92487800	Enhancers	HUVEC	blood vessel
4	chr5:92486000-92488400	Enhancers	NHDF-Ad	bronchial
5	chr5:92486200-92487600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr5:92486200-92487600	Enhancers	HMEC	breast
7	chr5:92486200-92487600	Enhancers	NHLF	lung
8	chr5:92486200-92487800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr5:92486200-92487800	Enhancers	NH-A	brain
10	chr5:92486200-92488400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr5:92486200-92488400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr5:92486400-92487800	Enhancers	A549	lung
13	chr5:92486400-92488400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr5:92486600-92487600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr5:92486600-92488200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr5:92486600-92496400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr5:92486600-92498200	Weak transcription	Aorta	Aorta
18	chr5:92486800-92487600	Enhancers	HSMM	muscle
19	chr5:92487200-92488000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
20	chr5:92487200-92488400	Active TSS	Stomach Smooth Muscle	stomach
21	chr5:92487400-92487600	Flanking Active TSS	Osteobl	bone
22	chr5:92487400-92487800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr5:92487400-92487800	Flanking Active TSS	NHEK	skin
24	chr5:92487400-92488800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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