Variant report

Variant	rs6873704
Chromosome Location	chr5:92490864-92490865
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10428523	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11738974	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12519773	0.90[ASN][1000 genomes]
rs13173682	0.84[ASN][1000 genomes]
rs13177386	0.95[ASN][1000 genomes]
rs1496331	0.95[ASN][1000 genomes]
rs1496332	0.95[ASN][1000 genomes]
rs17360811	0.89[AFR][1000 genomes]
rs4242239	0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4242240	0.85[EUR][1000 genomes]
rs4242241	0.85[EUR][1000 genomes]
rs4242242	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4264926	0.85[EUR][1000 genomes]
rs4266388	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4285204	0.83[EUR][1000 genomes]
rs4293897	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4302568	0.82[EUR][1000 genomes]
rs4321736	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4343824	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4358503	0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4449514	0.83[EUR][1000 genomes]
rs4469186	0.84[EUR][1000 genomes]
rs4470752	0.83[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs4489042	0.81[ASN][1000 genomes]
rs4551051	0.84[EUR][1000 genomes]
rs4557386	0.82[EUR][1000 genomes]
rs4613686	0.84[EUR][1000 genomes]
rs4632783	0.82[EUR][1000 genomes]
rs4869191	0.83[EUR][1000 genomes]
rs4869412	0.95[ASN][1000 genomes]
rs4869415	0.83[EUR][1000 genomes]
rs57542119	0.82[EUR][1000 genomes]
rs59262698	0.82[EUR][1000 genomes]
rs6557063	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6557066	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs66496757	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67779882	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67862943	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6883741	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6897863	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7446568	0.81[ASN][1000 genomes]
rs7700810	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7711868	0.83[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7714485	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs959922	0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015770	chr5:91911877-92498264	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1029175	chr5:92436038-92548473	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6873704	ANKRD32	cis	parietal	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92486600-92496400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr5:92486600-92498200	Weak transcription	Aorta	Aorta
3	chr5:92487800-92494200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr5:92488000-92494400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr5:92488200-92494600	Weak transcription	NHLF	lung
6	chr5:92488400-92494200	Weak transcription	NHDF-Ad	bronchial
7	chr5:92488400-92494400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr5:92488400-92494400	Weak transcription	Osteobl	bone
9	chr5:92488600-92494200	Weak transcription	HSMM	muscle
10	chr5:92490800-92494000	Weak transcription	HepG2	liver
11	chr5:92490800-92494200	Weak transcription	Muscle Satellite Cultured Cells	--

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