Variant report

Variant	rs4869191
Chromosome Location	chr5:92525434-92525435
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10428523	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11738974	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11742251	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11743310	1.00[ASN][1000 genomes]
rs12054781	0.89[ASN][1000 genomes]
rs34700540	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4242240	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4242241	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4242242	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4242244	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4264926	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4266388	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4285204	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4293897	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4302568	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4321736	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4370258	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4449514	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4469186	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4551050	1.00[ASN][1000 genomes]
rs4551051	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4554194	1.00[ASN][1000 genomes]
rs4557386	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4632783	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4869415	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4869417	0.94[ASN][1000 genomes]
rs5022102	0.80[EUR][1000 genomes]
rs55993462	0.92[ASN][1000 genomes]
rs57542119	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59262698	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6557063	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6557066	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66467168	0.94[ASN][1000 genomes]
rs66496757	0.83[EUR][1000 genomes]
rs66624622	0.94[ASN][1000 genomes]
rs67069214	0.94[ASN][1000 genomes]
rs67217436	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67735054	0.94[ASN][1000 genomes]
rs67779882	0.83[EUR][1000 genomes]
rs67862943	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6863269	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6873367	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6873704	0.83[EUR][1000 genomes]
rs6883741	0.83[EUR][1000 genomes]
rs6897863	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7448746	0.80[AMR][1000 genomes]
rs7700810	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7714485	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7715730	0.97[ASN][1000 genomes]
rs7722144	0.97[ASN][1000 genomes]
rs7722718	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9764490	0.91[ASN][1000 genomes]
rs9790989	0.89[ASN][1000 genomes]
rs9791001	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029175	chr5:92436038-92548473	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv830400	chr5:92515026-92738896	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv830401	chr5:92518294-92703611	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92521800-92528000	Weak transcription	Fetal Kidney	kidney
2	chr5:92523400-92530000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr5:92524600-92526000	Bivalent Enhancer	Fetal Heart	heart
4	chr5:92524600-92526200	Enhancers	HUVEC	blood vessel
5	chr5:92524600-92527600	Enhancers	NH-A	brain
6	chr5:92524600-92528200	Enhancers	Muscle Satellite Cultured Cells	--
7	chr5:92524600-92529000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr5:92524600-92529000	Enhancers	Osteobl	bone
9	chr5:92524600-92529800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr5:92524600-92530000	Enhancers	HMEC	breast
11	chr5:92524600-92530200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr5:92524600-92530200	Enhancers	HSMM	muscle
13	chr5:92524600-92530200	Enhancers	NHEK	skin
14	chr5:92524600-92530400	Enhancers	NHLF	lung
15	chr5:92524800-92525600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr5:92524800-92525600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr5:92524800-92526400	Enhancers	Hela-S3	cervix
18	chr5:92524800-92530200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr5:92525000-92525600	Enhancers	Right Ventricle	heart
20	chr5:92525000-92526000	Enhancers	HSMMtube	muscle
21	chr5:92525000-92526200	Enhancers	A549	lung
22	chr5:92525000-92529200	Enhancers	NHDF-Ad	bronchial
23	chr5:92525200-92525600	Enhancers	Right Atrium	heart
24	chr5:92525200-92526000	Enhancers	HepG2	liver
25	chr5:92525200-92526200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr5:92525200-92526200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr5:92525200-92526600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr5:92525200-92529800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr5:92525400-92525600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr5:92525400-92525800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr5:92525400-92526800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr5:92525400-92526800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links