Variant report

Variant	rs11742251
Chromosome Location	chr5:92562015-92562016
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10428523	0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11738974	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11743310	0.97[ASN][1000 genomes]
rs12054781	0.88[ASN][1000 genomes]
rs34700540	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4242240	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4242241	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4242242	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4242244	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4264926	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4266388	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4285204	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4293897	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4302568	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4321736	0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4370258	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4449514	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4469186	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4551050	0.97[ASN][1000 genomes]
rs4551051	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4554194	0.97[ASN][1000 genomes]
rs4557386	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4632783	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4869191	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4869415	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4869417	0.91[ASN][1000 genomes]
rs55993462	0.89[ASN][1000 genomes]
rs57542119	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs59262698	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6557066	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs66467168	0.91[ASN][1000 genomes]
rs66624622	0.91[ASN][1000 genomes]
rs67069214	0.92[ASN][1000 genomes]
rs67217436	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67735054	0.91[ASN][1000 genomes]
rs67862943	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6863269	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6873367	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6897863	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7700810	0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7714485	0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7715730	0.94[ASN][1000 genomes]
rs7722144	0.94[ASN][1000 genomes]
rs7722718	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9764490	0.88[ASN][1000 genomes]
rs9790989	0.86[ASN][1000 genomes]
rs9791001	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830400	chr5:92515026-92738896	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv830401	chr5:92518294-92703611	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv508370	chr5:92539782-92575241	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv462252	chr5:92557969-92595939	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv598941	chr5:92557969-92595939	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv462253	chr5:92557969-92611658	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv598942	chr5:92557969-92611658	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92556400-92562200	Weak transcription	Fetal Lung	lung
2	chr5:92561200-92562400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:92561200-92562800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr5:92561400-92562600	Enhancers	Brain Anterior Caudate	brain
5	chr5:92561600-92562400	Enhancers	Ovary	ovary
6	chr5:92561600-92562600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr5:92561800-92562800	Enhancers	NHDF-Ad	bronchial
8	chr5:92562000-92562600	Enhancers	Colon Smooth Muscle	Colon

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