Variant report

Variant	rs4869417
Chromosome Location	chr5:92544460-92544461
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10428523	0.93[ASN][1000 genomes]
rs11738974	0.93[ASN][1000 genomes]
rs11742251	0.91[ASN][1000 genomes]
rs11743310	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12054781	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34700540	0.91[ASN][1000 genomes]
rs4242240	0.94[ASN][1000 genomes]
rs4242241	0.94[ASN][1000 genomes]
rs4242242	0.93[ASN][1000 genomes]
rs4264926	0.94[ASN][1000 genomes]
rs4266388	0.89[ASN][1000 genomes]
rs4285204	0.94[ASN][1000 genomes]
rs4293897	0.90[ASN][1000 genomes]
rs4302568	0.94[ASN][1000 genomes]
rs4321736	0.93[ASN][1000 genomes]
rs4370258	0.83[ASN][1000 genomes]
rs4449514	0.94[ASN][1000 genomes]
rs4469186	0.94[ASN][1000 genomes]
rs4551050	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4551051	0.94[ASN][1000 genomes]
rs4554194	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4557386	0.94[ASN][1000 genomes]
rs4632783	0.94[ASN][1000 genomes]
rs4869191	0.94[ASN][1000 genomes]
rs4869415	0.94[ASN][1000 genomes]
rs55993462	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57542119	0.94[ASN][1000 genomes]
rs59262698	0.94[ASN][1000 genomes]
rs6557066	0.90[ASN][1000 genomes]
rs66467168	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66624622	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67069214	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67217436	0.94[ASN][1000 genomes]
rs67735054	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67862943	0.93[ASN][1000 genomes]
rs6863269	0.91[ASN][1000 genomes]
rs6897863	0.92[ASN][1000 genomes]
rs7700810	0.93[ASN][1000 genomes]
rs7714485	0.93[ASN][1000 genomes]
rs7715730	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7722144	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7722718	0.94[ASN][1000 genomes]
rs9764490	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9790989	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9791001	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029175	chr5:92436038-92548473	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv830400	chr5:92515026-92738896	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv830401	chr5:92518294-92703611	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv508370	chr5:92539782-92575241	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92541400-92545400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:92543400-92545200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr5:92543400-92545800	Enhancers	Fetal Lung	lung
4	chr5:92543600-92545000	Enhancers	NHDF-Ad	bronchial
5	chr5:92544000-92544800	Enhancers	Colon Smooth Muscle	Colon
6	chr5:92544000-92545800	Enhancers	Ovary	ovary
7	chr5:92544200-92545200	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr5:92544200-92545400	Enhancers	Fetal Kidney	kidney
9	chr5:92544200-92545600	Enhancers	Fetal Stomach	stomach
10	chr5:92544400-92545600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr5:92544400-92545800	Enhancers	Fetal Muscle Leg	muscle

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