Variant report

Variant	rs5022102
Chromosome Location	chr5:92549120-92549121
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10428523	0.82[EUR][1000 genomes]
rs11738974	0.80[EUR][1000 genomes]
rs34700540	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4242244	0.80[EUR][1000 genomes]
rs4285204	0.81[EUR][1000 genomes]
rs4302568	0.82[EUR][1000 genomes]
rs4321736	0.82[EUR][1000 genomes]
rs4370258	0.83[EUR][1000 genomes]
rs4557386	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4869191	0.80[EUR][1000 genomes]
rs57542119	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs59262698	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs67217436	0.86[EUR][1000 genomes]
rs6863269	0.83[EUR][1000 genomes]
rs7700810	0.81[EUR][1000 genomes]
rs7722718	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830400	chr5:92515026-92738896	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv830401	chr5:92518294-92703611	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv508370	chr5:92539782-92575241	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92548600-92549200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
2	chr5:92548600-92549400	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr5:92548600-92549400	Active TSS	HUES6 Cell Line	embryonic stem cell
4	chr5:92548800-92549200	Active TSS	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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