Variant report

Variant	rs13177386
Chromosome Location	chr5:92443605-92443606
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10514370	0.81[ASN][1000 genomes]
rs12519773	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1496331	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1496332	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4242239	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4343824	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4358503	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4470752	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4489042	0.84[ASN][1000 genomes]
rs4869412	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6557063	0.95[ASN][1000 genomes]
rs66496757	0.95[ASN][1000 genomes]
rs67779882	0.95[ASN][1000 genomes]
rs6873704	0.95[ASN][1000 genomes]
rs6883741	0.95[ASN][1000 genomes]
rs7446568	0.82[ASN][1000 genomes]
rs7711868	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs959922	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015770	chr5:91911877-92498264	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv830399	chr5:92290915-92462490	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1029175	chr5:92436038-92548473	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv980987	chr5:92442201-92446772	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92441800-92444000	Enhancers	Fetal Kidney	kidney
2	chr5:92442200-92444200	Enhancers	Fetal Lung	lung
3	chr5:92442200-92444200	Enhancers	Ovary	ovary
4	chr5:92442800-92443800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr5:92442800-92443800	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr5:92442800-92444200	Enhancers	Adipose Nuclei	Adipose
7	chr5:92443000-92443800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr5:92443000-92444200	Enhancers	Fetal Stomach	stomach
9	chr5:92443200-92444000	Weak transcription	Stomach Smooth Muscle	stomach
10	chr5:92443600-92444000	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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