Variant report

Variant	rs7711868
Chromosome Location	chr5:92461247-92461248
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10514370	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs12519773	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13177386	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1496331	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1496332	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17360811	0.80[AFR][1000 genomes]
rs4242239	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4343824	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4358503	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4470752	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4489042	0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs4869412	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6557063	0.89[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs66496757	0.87[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs67779882	0.87[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs6873704	0.83[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs6883741	0.87[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7446568	0.82[ASN][1000 genomes]
rs959922	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015770	chr5:91911877-92498264	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv830399	chr5:92290915-92462490	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1029175	chr5:92436038-92548473	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92454400-92462000	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr5:92454400-92463000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr5:92456800-92461400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:92458600-92462400	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr5:92459000-92463000	Weak transcription	Stomach Smooth Muscle	stomach
6	chr5:92459000-92465800	Weak transcription	Fetal Stomach	stomach
7	chr5:92459200-92462400	Weak transcription	Fetal Lung	lung
8	chr5:92461000-92466400	Weak transcription	Aorta	Aorta
9	chr5:92461200-92461600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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