Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10078721	0.87[ASN][1000 genomes]
rs10514370	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13177386	0.84[ASN][1000 genomes]
rs1496331	0.84[ASN][1000 genomes]
rs1496332	0.87[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs1496337	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1845840	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2009416	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2578490	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4242239	0.83[ASN][1000 genomes]
rs4343824	0.82[ASN][1000 genomes]
rs4358503	0.84[ASN][1000 genomes]
rs4470752	0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs4869412	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs6557063	0.81[ASN][1000 genomes]
rs66496757	0.81[ASN][1000 genomes]
rs67779882	0.81[ASN][1000 genomes]
rs6873704	0.81[ASN][1000 genomes]
rs6883741	0.81[ASN][1000 genomes]
rs7711868	0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs959922	0.87[AFR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015770	chr5:91911877-92498264	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv830399	chr5:92290915-92462490	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92424600-92428200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr5:92424800-92428400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr5:92426600-92428600	Enhancers	Fetal Lung	lung
4	chr5:92426800-92428200	Weak transcription	HUVEC	blood vessel
5	chr5:92427400-92428400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr5:92427600-92429200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:92427800-92428600	Weak transcription	Fetal Stomach	stomach
8	chr5:92428000-92428400	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr5:92428000-92429000	Enhancers	Muscle Satellite Cultured Cells	--
10	chr5:92428000-92429200	Enhancers	HSMM	muscle

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