Variant report

Variant	rs10514370
Chromosome Location	chr5:92435481-92435482
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10078721	0.85[ASN][1000 genomes]
rs13177386	0.81[ASN][1000 genomes]
rs1496331	0.81[ASN][1000 genomes]
rs1496332	0.83[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs1496337	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1845840	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2009416	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2578490	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4242239	0.81[ASN][1000 genomes]
rs4343824	0.80[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs4358503	0.81[ASN][1000 genomes]
rs4470752	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs4489042	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4869412	0.81[ASN][1000 genomes]
rs7711868	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs959922	0.83[AFR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015770	chr5:91911877-92498264	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv830399	chr5:92290915-92462490	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10514370	ANKRD32	cis	parietal	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92429000-92435600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr5:92435400-92435800	Enhancers	Adipose Nuclei	Adipose
3	chr5:92435400-92435800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr5:92435400-92435800	Enhancers	HSMMtube	muscle
5	chr5:92435400-92436200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr5:92435400-92436200	Enhancers	Placenta	Placenta
7	chr5:92435400-92436200	Enhancers	HSMM	muscle
8	chr5:92435400-92436400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr5:92435400-92436400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr5:92435400-92436400	Enhancers	Hela-S3	cervix
11	chr5:92435400-92436600	Enhancers	Osteobl	bone
12	chr5:92435400-92436800	Enhancers	A549	lung
13	chr5:92435400-92437600	Enhancers	Muscle Satellite Cultured Cells	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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