Variant report

Variant	rs4613686
Chromosome Location	chr5:92498497-92498498
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:92492798..92494347-chr5:92496334..92499006,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12513551	0.84[ASN][1000 genomes]
rs12523084	0.83[ASN][1000 genomes]
rs17360518	0.81[EUR][1000 genomes]
rs17360811	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4308464	0.81[EUR][1000 genomes]
rs4336351	0.84[ASN][1000 genomes]
rs4339337	0.81[ASN][1000 genomes]
rs4342312	0.82[EUR][1000 genomes]
rs4401560	0.84[ASN][1000 genomes]
rs58191018	0.84[ASN][1000 genomes]
rs6557063	0.85[EUR][1000 genomes]
rs66496757	0.84[EUR][1000 genomes]
rs66552510	0.84[ASN][1000 genomes]
rs66614167	0.82[ASN][1000 genomes]
rs66856683	0.84[ASN][1000 genomes]
rs67395049	0.84[ASN][1000 genomes]
rs67565700	0.82[ASN][1000 genomes]
rs67779882	0.84[EUR][1000 genomes]
rs6873704	0.84[EUR][1000 genomes]
rs6883741	0.85[EUR][1000 genomes]
rs72656686	0.84[ASN][1000 genomes]
rs7718530	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9716433	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029175	chr5:92436038-92548473	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv980697	chr5:92498149-92499469	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92496200-92498600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
2	chr5:92496400-92498600	Enhancers	Fetal Stomach	stomach
3	chr5:92496400-92500800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:92496400-92500800	Enhancers	HMEC	breast
5	chr5:92496600-92499400	Enhancers	Fetal Lung	lung
6	chr5:92496600-92500600	Enhancers	Placenta Amnion	Placenta Amnion
7	chr5:92496600-92500800	Enhancers	NHLF	lung
8	chr5:92497000-92499400	Enhancers	Adipose Nuclei	Adipose
9	chr5:92497200-92499000	Weak transcription	Colon Smooth Muscle	Colon
10	chr5:92497200-92499200	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr5:92497200-92499400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr5:92497400-92499400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr5:92497600-92498800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr5:92497600-92499400	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr5:92497600-92499400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr5:92497600-92499400	Enhancers	Fetal Kidney	kidney
17	chr5:92497600-92499600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr5:92497800-92498600	Enhancers	Duodenum Smooth Muscle	Duodenum
19	chr5:92497800-92498800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr5:92497800-92499000	Flanking Active TSS	NH-A	brain
21	chr5:92497800-92499200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr5:92497800-92499400	Enhancers	Hela-S3	cervix
23	chr5:92498000-92498600	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr5:92498000-92498600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr5:92498000-92498600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr5:92498000-92498600	Enhancers	Brain Substantia Nigra	brain
27	chr5:92498000-92498600	Flanking Active TSS	Osteobl	bone
28	chr5:92498000-92499000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
29	chr5:92498000-92499000	Enhancers	Brain Cingulate Gyrus	brain
30	chr5:92498000-92499000	Enhancers	Stomach Smooth Muscle	stomach
31	chr5:92498000-92499400	Flanking Active TSS	HUVEC	blood vessel
32	chr5:92498200-92498600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr5:92498200-92498600	Enhancers	iPS-18 Cell Line	embryonic stem cell
34	chr5:92498200-92498600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr5:92498200-92498600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
36	chr5:92498200-92498600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr5:92498200-92498600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr5:92498200-92498600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr5:92498200-92498600	Enhancers	Right Atrium	heart
40	chr5:92498200-92498600	Flanking Active TSS	HSMM	muscle
41	chr5:92498200-92498600	Flanking Active TSS	NHDF-Ad	bronchial
42	chr5:92498200-92499000	Enhancers	HUES6 Cell Line	embryonic stem cell
43	chr5:92498200-92499000	Enhancers	Fetal Brain Female	brain
44	chr5:92498200-92499000	Flanking Active TSS	NHEK	skin
45	chr5:92498400-92498600	Flanking Active TSS	Fetal Brain Male	brain
46	chr5:92498400-92498800	Enhancers	A549	lung
47	chr5:92498400-92499400	Enhancers	HSMMtube	muscle
48	chr5:92498400-92500400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr5:92498400-92500400	Weak transcription	Rectal Smooth Muscle	rectum

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