Variant report

Variant	rs66856683
Chromosome Location	chr5:92529419-92529420
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12513458	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12513551	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12522681	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12522702	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12523084	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17082917	0.82[AFR][1000 genomes]
rs17083019	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4312865	0.81[EUR][1000 genomes]
rs4336351	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4339337	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4401560	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4599520	0.81[AMR][1000 genomes]
rs4613686	0.84[ASN][1000 genomes]
rs57921649	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs58191018	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59399491	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66552510	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66614167	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67395049	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67565700	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67895058	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs72656686	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72784442	0.80[AMR][1000 genomes]
rs9716433	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029175	chr5:92436038-92548473	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv830400	chr5:92515026-92738896	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv830401	chr5:92518294-92703611	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92523400-92530000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr5:92524600-92529800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr5:92524600-92530000	Enhancers	HMEC	breast
4	chr5:92524600-92530200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:92524600-92530200	Enhancers	HSMM	muscle
6	chr5:92524600-92530200	Enhancers	NHEK	skin
7	chr5:92524600-92530400	Enhancers	NHLF	lung
8	chr5:92524800-92530200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr5:92525200-92529800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr5:92525600-92530200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr5:92525600-92537200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr5:92525800-92536200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr5:92526800-92529800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr5:92526800-92529800	Enhancers	HSMMtube	muscle
15	chr5:92526800-92530000	Enhancers	HUVEC	blood vessel
16	chr5:92526800-92530400	Enhancers	Hela-S3	cervix
17	chr5:92527000-92529600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr5:92527200-92530000	Enhancers	HepG2	liver
19	chr5:92527200-92530400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr5:92527400-92529800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr5:92527800-92530400	Enhancers	Fetal Lung	lung
22	chr5:92528000-92530200	Enhancers	Fetal Kidney	kidney
23	chr5:92528400-92530200	Enhancers	A549	lung
24	chr5:92528600-92529600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr5:92528600-92530200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr5:92528600-92530200	Enhancers	Fetal Stomach	stomach
27	chr5:92528800-92530000	Enhancers	Ovary	ovary
28	chr5:92528800-92530200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr5:92529000-92530000	Enhancers	NH-A	brain
30	chr5:92529000-92530600	Enhancers	Muscle Satellite Cultured Cells	--
31	chr5:92529000-92533000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr5:92529200-92529800	Weak transcription	NHDF-Ad	bronchial
33	chr5:92529200-92530000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr5:92529400-92529800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr5:92529400-92530200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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