Variant report

Variant	rs67565700
Chromosome Location	chr5:92521717-92521718
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12513458	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12513551	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12522681	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12522702	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12523084	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17082917	0.82[AFR][1000 genomes]
rs17083019	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4312865	0.82[EUR][1000 genomes]
rs4336351	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4339337	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4401560	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4599520	0.81[AMR][1000 genomes]
rs4613686	0.82[ASN][1000 genomes]
rs57921649	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs58191018	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59399491	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs66552510	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs66614167	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66856683	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67395049	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67895058	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72656686	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72784442	0.80[AMR][1000 genomes]
rs9716433	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029175	chr5:92436038-92548473	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv830400	chr5:92515026-92738896	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv830401	chr5:92518294-92703611	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3447545	chr5:92521496-92524994	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92519600-92522800	Enhancers	NHDF-Ad	bronchial
2	chr5:92521200-92522000	Enhancers	HSMM	muscle
3	chr5:92521400-92522000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr5:92521400-92522200	Enhancers	HMEC	breast
5	chr5:92521400-92522600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr5:92521400-92522800	Enhancers	Osteobl	bone
7	chr5:92521400-92523000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr5:92521400-92523600	Enhancers	Muscle Satellite Cultured Cells	--
9	chr5:92521600-92521800	Enhancers	Fetal Kidney	kidney
10	chr5:92521600-92522000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr5:92521600-92522400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr5:92521600-92522400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr5:92521600-92522400	Enhancers	NH-A	brain
14	chr5:92521600-92522400	Enhancers	NHEK	skin
15	chr5:92521600-92522600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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