Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12513458	0.97[ASN][1000 genomes]
rs12522681	0.97[ASN][1000 genomes]
rs12522702	0.97[ASN][1000 genomes]
rs17082917	0.91[ASN][1000 genomes]
rs17360518	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17360811	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1961168	0.81[JPT][hapmap]
rs4308464	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4312865	0.97[ASN][1000 genomes]
rs4493655	0.96[ASN][1000 genomes]
rs4599520	0.97[ASN][1000 genomes]
rs4613686	0.82[EUR][1000 genomes]
rs55971857	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56854549	0.96[ASN][1000 genomes]
rs57921649	0.96[ASN][1000 genomes]
rs59273613	0.94[ASN][1000 genomes]
rs67832642	0.97[ASN][1000 genomes]
rs67895058	0.96[ASN][1000 genomes]
rs6866281	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs7718530	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9314229	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs9314230	0.82[CHB][hapmap];0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015770	chr5:91911877-92498264	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1029175	chr5:92436038-92548473	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4342312	ANKRD32	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92477200-92478000	Active TSS	Stomach Smooth Muscle	stomach
2	chr5:92477600-92478000	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr5:92477600-92478000	Enhancers	Muscle Satellite Cultured Cells	--
4	chr5:92477600-92478000	Active TSS	Fetal Brain Male	brain
5	chr5:92477600-92478000	Enhancers	Ovary	ovary
6	chr5:92477600-92478000	Active TSS	Osteobl	bone
7	chr5:92477800-92478200	Enhancers	NHLF	lung

Quick Search: