Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:92459385..92461272-chr5:92463234..92464762,2	K562	blood:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1075873	0.80[ASN][1000 genomes]
rs11951873	0.80[ASN][1000 genomes]
rs11958890	0.84[ASN][1000 genomes]
rs12513458	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12514052	0.82[ASN][1000 genomes]
rs12522681	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12522702	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1603407	0.84[ASN][1000 genomes]
rs17082917	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17360518	0.96[ASN][1000 genomes]
rs17360811	0.88[ASN][1000 genomes]
rs4308464	0.95[ASN][1000 genomes]
rs4312865	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4342312	0.94[ASN][1000 genomes]
rs4493655	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4599520	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55971857	0.97[ASN][1000 genomes]
rs56854549	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57921649	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67020389	0.80[ASN][1000 genomes]
rs67832642	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67895058	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7718530	0.94[ASN][1000 genomes]
rs998492	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015770	chr5:91911877-92498264	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv830399	chr5:92290915-92462490	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1029175	chr5:92436038-92548473	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92454400-92462000	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr5:92454400-92463000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr5:92456800-92461200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr5:92456800-92461400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:92458600-92462400	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr5:92459000-92463000	Weak transcription	Stomach Smooth Muscle	stomach
7	chr5:92459000-92465800	Weak transcription	Fetal Stomach	stomach
8	chr5:92459200-92462400	Weak transcription	Fetal Lung	lung
9	chr5:92461000-92466400	Weak transcription	Aorta	Aorta

Quick Search: