Variant report

Variant	rs55971857
Chromosome Location	chr5:92441594-92441595
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1075873	0.83[ASN][1000 genomes]
rs11951873	0.83[ASN][1000 genomes]
rs11958890	0.84[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs12513458	0.93[ASN][1000 genomes]
rs12514052	0.85[ASN][1000 genomes]
rs12522681	0.93[ASN][1000 genomes]
rs12522702	0.93[ASN][1000 genomes]
rs1603407	0.84[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs17082917	0.99[ASN][1000 genomes]
rs17082934	0.84[AFR][1000 genomes]
rs17360518	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17360811	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4301219	0.82[ASN][1000 genomes]
rs4308464	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4312865	0.93[ASN][1000 genomes]
rs4342312	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4493655	0.96[ASN][1000 genomes]
rs4599520	0.93[ASN][1000 genomes]
rs56854549	0.92[ASN][1000 genomes]
rs57921649	0.92[ASN][1000 genomes]
rs59273613	0.97[ASN][1000 genomes]
rs67020389	0.83[ASN][1000 genomes]
rs67832642	0.94[ASN][1000 genomes]
rs67895058	0.92[ASN][1000 genomes]
rs7718530	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs998492	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015770	chr5:91911877-92498264	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv830399	chr5:92290915-92462490	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1029175	chr5:92436038-92548473	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92437400-92443000	Weak transcription	Stomach Smooth Muscle	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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