Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11958890	0.82[ASN][1000 genomes]
rs12513458	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12514052	0.81[ASN][1000 genomes]
rs12522681	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12522702	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1603407	0.82[ASN][1000 genomes]
rs17082917	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17360518	0.94[ASN][1000 genomes]
rs17360811	0.90[ASN][1000 genomes]
rs4308464	0.98[ASN][1000 genomes]
rs4312865	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4342312	0.97[ASN][1000 genomes]
rs4493655	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4599520	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55971857	0.94[ASN][1000 genomes]
rs56854549	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57921649	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59273613	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67895058	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7718530	0.97[ASN][1000 genomes]
rs998492	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015770	chr5:91911877-92498264	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1029175	chr5:92436038-92548473	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92459000-92465800	Weak transcription	Fetal Stomach	stomach
2	chr5:92461000-92466400	Weak transcription	Aorta	Aorta
3	chr5:92462600-92466200	Weak transcription	Fetal Lung	lung
4	chr5:92462800-92466200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:92463000-92465800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr5:92463000-92466400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr5:92463000-92469000	Enhancers	Stomach Smooth Muscle	stomach
8	chr5:92463200-92466200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr5:92463200-92477600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr5:92463400-92471400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr5:92465200-92466400	Enhancers	Colon Smooth Muscle	Colon
12	chr5:92465400-92466600	Enhancers	Adipose Nuclei	Adipose
13	chr5:92465600-92467200	Enhancers	Fetal Kidney	kidney
14	chr5:92465600-92467800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

Quick Search: