Variant report

Variant	rs1317416
Chromosome Location	chr4:171955297-171955298
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1223310	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1238197	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12715919	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1508508	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1813083	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1911820	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1949006	0.82[EUR][1000 genomes]
rs2217561	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2332082	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2332084	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2332087	0.85[AFR][1000 genomes]
rs2567952	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2661917	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2661918	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35634213	0.82[EUR][1000 genomes]
rs4095094	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4692620	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881345	chr4:171673765-172228547	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1018793	chr4:171808272-172395180	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv881662	chr4:171842726-171957000	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:171952400-171956400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:171953600-171960600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr4:171954800-171955400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr4:171954800-171956000	Enhancers	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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