Variant report

Variant	rs35634213
Chromosome Location	chr4:171948866-171948867
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10021901	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12648588	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12651692	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1317416	0.82[EUR][1000 genomes]
rs1508508	0.84[EUR][1000 genomes]
rs1911811	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1949006	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2102429	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28537418	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28706078	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2877579	0.99[ASN][1000 genomes]
rs2940431	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4095094	0.85[EUR][1000 genomes]
rs4692626	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881345	chr4:171673765-172228547	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1018793	chr4:171808272-172395180	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv881662	chr4:171842726-171957000	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv822828	chr4:171947856-171949040	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:171944600-171949000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr4:171946200-171949000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr4:171946400-171949200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr4:171946400-171950200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr4:171946400-171954800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr4:171947200-171949200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr4:171947400-171949200	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr4:171947400-171949600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr4:171947400-171949600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr4:171948000-171949400	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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