Variant report

Variant	rs28537418
Chromosome Location	chr4:171943691-171943692
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10021901	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12648588	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12651692	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1508508	0.86[EUR][1000 genomes]
rs1911811	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1949006	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2102429	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28706078	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2877579	0.99[ASN][1000 genomes]
rs2940431	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35634213	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4095094	0.87[EUR][1000 genomes]
rs4692626	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881345	chr4:171673765-172228547	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1018793	chr4:171808272-172395180	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv881662	chr4:171842726-171957000	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:171929000-171944400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:171939000-171944000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:171942000-171944600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr4:171942200-171944600	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr4:171942200-171946000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr4:171942600-171944200	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr4:171942600-171944600	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr4:171943000-171945800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr4:171943200-171944200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr4:171943200-171944600	Enhancers	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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