Variant report
Variant | rs13174596 |
---|---|
Chromosome Location | chr5:114196480-114196481 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs11948307 | 1.00[AMR][1000 genomes] |
rs11952733 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs11960032 | 1.00[AMR][1000 genomes] |
rs55790041 | 1.00[AMR][1000 genomes] |
rs56021445 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs56114254 | 1.00[AMR][1000 genomes] |
rs56198227 | 1.00[AMR][1000 genomes] |
rs56239364 | 1.00[AMR][1000 genomes] |
rs57056024 | 1.00[AMR][1000 genomes] |
rs57306767 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs57956079 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs58584685 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs60060702 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs6895615 | 1.00[AMR][1000 genomes] |
rs73779991 | 1.00[AMR][1000 genomes] |
rs73779993 | 1.00[AMR][1000 genomes] |
rs73779995 | 1.00[AMR][1000 genomes] |
rs73782604 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73782606 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73782631 | 1.00[AMR][1000 genomes] |
rs73782633 | 1.00[AMR][1000 genomes] |
rs73782639 | 1.00[AMR][1000 genomes] |
rs73782641 | 1.00[AMR][1000 genomes] |
rs7700745 | 1.00[AMR][1000 genomes] |
rs7721116 | 1.00[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv882729 | chr5:113743628-114497708 | Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
2 | nsv1020798 | chr5:113821828-114392727 | Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
3 | nsv537867 | chr5:113821828-114392727 | Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr5:114193000-114196600 | Enhancers | Fetal Brain Male | brain |
2 | chr5:114195200-114200600 | Weak transcription | Fetal Muscle Leg | muscle |