Variant report

Variant	rs73779993
Chromosome Location	chr5:114118588-114118589
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11948307	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11952733	1.00[AMR][1000 genomes]
rs11953131	0.85[AFR][1000 genomes]
rs13174596	1.00[AMR][1000 genomes]
rs56021445	1.00[AMR][1000 genomes]
rs57306767	1.00[AMR][1000 genomes]
rs57956079	1.00[AMR][1000 genomes]
rs58584685	1.00[AMR][1000 genomes]
rs60060702	1.00[AMR][1000 genomes]
rs60385458	0.92[AFR][1000 genomes]
rs60894767	0.92[AFR][1000 genomes]
rs6895615	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73779973	0.89[AFR][1000 genomes]
rs73779991	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73779995	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73782604	1.00[AMR][1000 genomes]
rs73782606	1.00[AMR][1000 genomes]
rs7700745	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7711709	0.92[AFR][1000 genomes]
rs7721116	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882729	chr5:113743628-114497708	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1020798	chr5:113821828-114392727	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv537867	chr5:113821828-114392727	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv599435	chr5:113957246-114166068	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1018819	chr5:114036386-114175065	Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv599446	chr5:114041080-114166068	Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1032132	chr5:114041518-114175142	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1015594	chr5:114117180-114140694	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv599447	chr5:114117381-114143429	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114117800-114118800	Enhancers	Fetal Muscle Leg	muscle
2	chr5:114118400-114118600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr5:114118400-114119000	Enhancers	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links