Variant report
| Variant | rs13175039 |
|---|---|
| Chromosome Location | chr5:113464826-113464827 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs10056192 | 0.83[ASN][1000 genomes] |
| rs1027036 | 0.83[ASN][1000 genomes] |
| rs11241264 | 1.00[ASN][1000 genomes] |
| rs11241265 | 1.00[ASN][1000 genomes] |
| rs11949263 | 1.00[ASN][1000 genomes] |
| rs11949451 | 1.00[ASN][1000 genomes] |
| rs11954178 | 1.00[ASN][1000 genomes] |
| rs11959267 | 1.00[ASN][1000 genomes] |
| rs13161970 | 1.00[ASN][1000 genomes] |
| rs13177238 | 1.00[ASN][1000 genomes] |
| rs13181093 | 0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13187004 | 1.00[ASN][1000 genomes] |
| rs1487217 | 0.83[ASN][1000 genomes] |
| rs2035634 | 0.88[ASN][1000 genomes] |
| rs2954359 | 0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34016127 | 1.00[ASN][1000 genomes] |
| rs34122693 | 0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34252898 | 1.00[ASN][1000 genomes] |
| rs35304495 | 0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35525809 | 1.00[ASN][1000 genomes] |
| rs4389680 | 1.00[ASN][1000 genomes] |
| rs6860602 | 0.94[ASN][1000 genomes] |
| rs6867905 | 1.00[ASN][1000 genomes] |
| rs6868359 | 1.00[ASN][1000 genomes] |
| rs6878068 | 1.00[ASN][1000 genomes] |
| rs6892494 | 1.00[ASN][1000 genomes] |
| rs6892544 | 1.00[ASN][1000 genomes] |
| rs6893099 | 1.00[ASN][1000 genomes] |
| rs6896260 | 1.00[ASN][1000 genomes] |
| rs7723490 | 1.00[ASN][1000 genomes] |
| rs7726063 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv882726 | chr5:113404933-113555626 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv1020064 | chr5:113418512-113492951 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:113453200-113465200 | Weak transcription | Pancreas | Pancrea |
| 2 | chr5:113456000-113468600 | Weak transcription | Fetal Heart | heart |
