Variant report

Variant	rs1487217
Chromosome Location	chr5:113434086-113434087
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10056192	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1027036	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11241264	0.83[ASN][1000 genomes]
rs11241265	0.83[ASN][1000 genomes]
rs11949263	0.83[ASN][1000 genomes]
rs11949451	0.83[ASN][1000 genomes]
rs11954178	0.83[ASN][1000 genomes]
rs11959267	0.83[ASN][1000 genomes]
rs13161970	0.83[ASN][1000 genomes]
rs13175039	0.83[ASN][1000 genomes]
rs13177238	0.83[ASN][1000 genomes]
rs13181093	0.83[ASN][1000 genomes]
rs13187004	0.83[ASN][1000 genomes]
rs2954359	0.83[ASN][1000 genomes]
rs34016127	0.83[ASN][1000 genomes]
rs34122693	0.83[ASN][1000 genomes]
rs34252898	0.83[ASN][1000 genomes]
rs35304495	0.83[ASN][1000 genomes]
rs35525809	0.83[ASN][1000 genomes]
rs4389680	0.83[ASN][1000 genomes]
rs6867905	0.83[ASN][1000 genomes]
rs6868359	0.83[ASN][1000 genomes]
rs6878068	0.83[ASN][1000 genomes]
rs6892494	0.83[ASN][1000 genomes]
rs6892544	0.83[ASN][1000 genomes]
rs6893099	0.83[ASN][1000 genomes]
rs6896260	0.83[ASN][1000 genomes]
rs7723490	0.83[ASN][1000 genomes]
rs7726063	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471042	chr5:113160490-113440892	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv882726	chr5:113404933-113555626	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1020064	chr5:113418512-113492951	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113434000-113434200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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