Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10040831	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1027164	0.81[MEX][hapmap];0.83[AMR][1000 genomes]
rs1027165	0.83[AMR][1000 genomes]
rs11749256	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12697156	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13159288	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13183932	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1349953	0.83[AMR][1000 genomes]
rs1349954	0.83[AMR][1000 genomes]
rs1378244	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1378245	0.83[AMR][1000 genomes]
rs1387639	0.83[AMR][1000 genomes]
rs1454908	0.83[AMR][1000 genomes]
rs1470991	0.83[AMR][1000 genomes]
rs1826100	0.82[AMR][1000 genomes]
rs1948274	0.83[AMR][1000 genomes]
rs1948275	0.83[AMR][1000 genomes]
rs1948277	0.83[AMR][1000 genomes]
rs4640745	0.83[AMR][1000 genomes]
rs6869557	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7716548	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7720118	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs902158	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525330	chr5:56931673-57320343	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv1792273	chr5:57214817-57320343	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13175618	MAP3K1	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57231800-57232200	Enhancers	K562	blood
2	chr5:57231800-57233800	Enhancers	NHLF	lung
3	chr5:57232000-57233800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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