Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10040831	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10061849	0.82[EUR][1000 genomes]
rs1027164	0.83[AMR][1000 genomes]
rs1027165	0.83[AMR][1000 genomes]
rs11749256	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12697156	1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13175618	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13183932	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1349953	0.83[AMR][1000 genomes]
rs1349954	0.83[AMR][1000 genomes]
rs1378244	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1378245	0.83[AMR][1000 genomes]
rs1387639	0.83[AMR][1000 genomes]
rs1454908	0.83[AMR][1000 genomes]
rs1470991	0.83[AMR][1000 genomes]
rs1826100	0.82[AMR][1000 genomes]
rs1948274	0.83[AMR][1000 genomes]
rs1948275	0.83[AMR][1000 genomes]
rs1948277	0.83[AMR][1000 genomes]
rs4640745	0.83[AMR][1000 genomes]
rs6869557	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7716548	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7720118	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs902158	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525330	chr5:56931673-57320343	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv1792273	chr5:57214817-57320343	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57225000-57228800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:57228400-57229200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr5:57228400-57229400	Enhancers	HMEC	breast
4	chr5:57228600-57229000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:57228600-57229000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr5:57228600-57229200	Enhancers	NHEK	skin

Quick Search: