Variant report

Variant	rs10061849
Chromosome Location	chr5:57225493-57225494
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10040831	0.81[EUR][1000 genomes]
rs10060972	0.82[AMR][1000 genomes]
rs12697156	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs13159288	0.82[EUR][1000 genomes]
rs1454909	0.92[AMR][1000 genomes]
rs1489786	0.85[AMR][1000 genomes]
rs6450449	0.91[AMR][1000 genomes]
rs6869557	0.81[EUR][1000 genomes]
rs7716548	0.96[CEU][hapmap]
rs7720118	0.81[EUR][1000 genomes]
rs7720934	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525330	chr5:56931673-57320343	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv1792273	chr5:57214817-57320343	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57225000-57228200	Enhancers	Brain Germinal Matrix	brain
2	chr5:57225000-57228800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:57225400-57226000	Enhancers	Fetal Stomach	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links