Variant report

Variant	rs7720934
Chromosome Location	chr5:57204149-57204150
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10060972	0.83[AMR][1000 genomes]
rs10061849	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12697156	0.83[CEU][hapmap]
rs1454909	0.82[ASW][hapmap];0.91[MEX][hapmap];0.81[TSI][hapmap];0.87[AMR][1000 genomes]
rs1489786	0.84[AMR][1000 genomes]
rs6450449	0.88[AMR][1000 genomes]
rs7716548	0.83[CEU][hapmap];0.95[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525330	chr5:56931673-57320343	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7720934	MAP3K1	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57199000-57207200	Weak transcription	Psoas Muscle	Psoas
2	chr5:57202800-57207000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr5:57202800-57207200	Weak transcription	Fetal Lung	lung
4	chr5:57203400-57207000	Weak transcription	Skeletal Muscle Male	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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