Variant report

Variant	rs13175765
Chromosome Location	chr5:42596461-42596462
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:63713533..63714174-chr5:42595948..42596531,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10041108	1.00[ASN][1000 genomes]
rs10069861	1.00[ASN][1000 genomes]
rs10440649	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10941582	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10941588	1.00[ASN][1000 genomes]
rs1109882	1.00[ASN][1000 genomes]
rs11948120	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11948453	0.88[EUR][1000 genomes]
rs11957404	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12514437	1.00[ASN][1000 genomes]
rs13163126	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13171019	1.00[ASN][1000 genomes]
rs13173465	0.85[EUR][1000 genomes]
rs13182117	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13354167	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28943882	0.92[EUR][1000 genomes]
rs34159518	1.00[ASN][1000 genomes]
rs35164552	1.00[ASN][1000 genomes]
rs35893798	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4242122	1.00[ASN][1000 genomes]
rs4242123	1.00[ASN][1000 genomes]
rs4242124	1.00[ASN][1000 genomes]
rs4554233	0.89[EUR][1000 genomes]
rs4866791	0.85[EUR][1000 genomes]
rs4866793	1.00[ASN][1000 genomes]
rs4866955	1.00[ASN][1000 genomes]
rs4866956	1.00[ASN][1000 genomes]
rs4866957	1.00[ASN][1000 genomes]
rs5025611	1.00[ASN][1000 genomes]
rs6414898	1.00[ASN][1000 genomes]
rs6451634	1.00[ASN][1000 genomes]
rs6451641	1.00[ASN][1000 genomes]
rs6451643	1.00[ASN][1000 genomes]
rs6871947	1.00[ASN][1000 genomes]
rs6873340	1.00[ASN][1000 genomes]
rs6894403	1.00[ASN][1000 genomes]
rs7444761	1.00[ASN][1000 genomes]
rs7702524	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7709370	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7709790	0.91[EUR][1000 genomes]
rs9292854	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933208	chr5:41879946-42876624	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	112 gene(s)	inside rSNPs	diseases
2	nsv492147	chr5:41902086-42896162	Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	113 gene(s)	inside rSNPs	diseases
3	nsv1020464	chr5:42488628-42699394	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1018751	chr5:42491883-42697923	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:42591800-42597600	Weak transcription	K562	blood
2	chr5:42592000-42596800	Weak transcription	Right Atrium	heart
3	chr5:42592000-42614400	Weak transcription	Aorta	Aorta
4	chr5:42592200-42600000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr5:42592200-42605800	Weak transcription	Stomach Smooth Muscle	stomach
6	chr5:42593000-42601200	Enhancers	Liver	Liver
7	chr5:42594000-42597800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr5:42594000-42597800	Weak transcription	Fetal Lung	lung
9	chr5:42594200-42598200	Weak transcription	Adipose Nuclei	Adipose
10	chr5:42595200-42599600	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr5:42595200-42600400	Enhancers	Fetal Heart	heart
12	chr5:42595600-42596600	Enhancers	HSMM	muscle
13	chr5:42595600-42599000	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr5:42595800-42596800	Enhancers	HSMMtube	muscle
15	chr5:42595800-42597000	Enhancers	Fetal Muscle Leg	muscle
16	chr5:42595800-42598600	Enhancers	Psoas Muscle	Psoas
17	chr5:42595800-42598600	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr5:42596400-42597800	Enhancers	Left Ventricle	heart
19	chr5:42596400-42598000	Enhancers	Right Ventricle	heart

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