Variant report

Variant	rs35164552
Chromosome Location	chr5:42592270-42592271
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10041108	1.00[ASN][1000 genomes]
rs10069861	1.00[ASN][1000 genomes]
rs10440649	1.00[ASN][1000 genomes]
rs10941582	1.00[ASN][1000 genomes]
rs10941588	1.00[ASN][1000 genomes]
rs1109882	1.00[ASN][1000 genomes]
rs11948120	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11957404	1.00[ASN][1000 genomes]
rs12514437	1.00[ASN][1000 genomes]
rs13163126	1.00[ASN][1000 genomes]
rs13171019	1.00[ASN][1000 genomes]
rs13175765	1.00[ASN][1000 genomes]
rs13182117	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13354167	1.00[ASN][1000 genomes]
rs34159518	1.00[ASN][1000 genomes]
rs35893798	1.00[ASN][1000 genomes]
rs4242122	1.00[ASN][1000 genomes]
rs4242123	1.00[ASN][1000 genomes]
rs4242124	1.00[ASN][1000 genomes]
rs4866793	1.00[ASN][1000 genomes]
rs4866955	1.00[ASN][1000 genomes]
rs4866956	1.00[ASN][1000 genomes]
rs4866957	1.00[ASN][1000 genomes]
rs5025611	1.00[ASN][1000 genomes]
rs6414898	1.00[ASN][1000 genomes]
rs6451634	1.00[ASN][1000 genomes]
rs6451641	1.00[ASN][1000 genomes]
rs6451643	1.00[ASN][1000 genomes]
rs6871947	1.00[ASN][1000 genomes]
rs6873340	1.00[ASN][1000 genomes]
rs6894403	1.00[ASN][1000 genomes]
rs7444761	1.00[ASN][1000 genomes]
rs7702524	1.00[ASN][1000 genomes]
rs7709370	1.00[ASN][1000 genomes]
rs9292854	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933208	chr5:41879946-42876624	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	112 gene(s)	inside rSNPs	diseases
2	nsv492147	chr5:41902086-42896162	Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	113 gene(s)	inside rSNPs	diseases
3	nsv1020464	chr5:42488628-42699394	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1018751	chr5:42491883-42697923	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:42590000-42592400	Enhancers	Right Ventricle	heart
2	chr5:42590600-42592400	Enhancers	Fetal Muscle Leg	muscle
3	chr5:42590800-42592400	Enhancers	Fetal Intestine Large	intestine
4	chr5:42591000-42592800	Enhancers	Fetal Heart	heart
5	chr5:42591200-42592400	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr5:42591200-42593000	Weak transcription	Liver	Liver
7	chr5:42591400-42592400	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr5:42591600-42592400	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr5:42591600-42592400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr5:42591600-42592400	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr5:42591600-42593200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr5:42591600-42593400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr5:42591600-42593600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr5:42591600-42593600	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr5:42591800-42593600	Enhancers	HSMMtube	muscle
16	chr5:42591800-42597600	Weak transcription	K562	blood
17	chr5:42592000-42592400	Enhancers	HSMM	muscle
18	chr5:42592000-42593600	Enhancers	Monocytes-CD14+_RO01746	blood
19	chr5:42592000-42596800	Weak transcription	Right Atrium	heart
20	chr5:42592000-42614400	Weak transcription	Aorta	Aorta
21	chr5:42592200-42593600	Weak transcription	Adipose Nuclei	Adipose
22	chr5:42592200-42593600	Weak transcription	Spleen	Spleen
23	chr5:42592200-42593800	Weak transcription	Fetal Lung	lung
24	chr5:42592200-42595800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr5:42592200-42595800	Weak transcription	Left Ventricle	heart
26	chr5:42592200-42595800	Weak transcription	Psoas Muscle	Psoas
27	chr5:42592200-42600000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr5:42592200-42605800	Weak transcription	Stomach Smooth Muscle	stomach

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